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BaseInfo

ncRNA ID	novel_gar_miR1604
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:111901276-111901463 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UCAAUGAUUGGACUAGGGUUU - 21
Stem-loop(if miRNA)	--   G               CAC A            UUUUUUUUUUUUUUGGG         UGCA         -    G UUA  UAGU     AU   GCU   AUU UAGUCCAAUCAUUGA   C UUAGUAUUUUUU                 GUCAAAAUU    UACUAUCAG AUAU C   CU    UCAUA  GAU   U   ||| |||||||||||||||   | ||||||||||||                 |||||||||    ||||||||| |||| |   ||    |||||  |||   C   UGG AUCAGGUUAGUAACU   G AAUUAUAAAAGA                 UAGUUUUAA    AUGGUAGUU UAUA G   GA    AGUAU  UUA   U UU   G               AUA A            -----------------         ----         A    G UUC  ---U     GG   AAA
Stem-loop sequence	AUUGUAGUCCAAUCAUUGACACCAUUAGUAUUUUUUUUUUUUUUUUUUUUGGGGUCAAAAUUUGCAUACUAUCAGAUAUGCUUACUUAGUUCAUAAUGAUGCUUCUAAAAUUGGUAUGAUAGCUUGGAUAUAUUGAUGGUAAAUUUUGAUAGAAAAUAUUAAAGAUAUCAAUGAUUGGACUAGGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017757109.1	ncRNA:21   UUUGGGAUCAGGUUAGUAACU   1   *||*|=||||||||||||||| targets:1982   UAAGCUUAGUCCAAUCAUUGA   2002 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum mediator of RNA polymerase II transcription subunit 33B-like (LOC108457903), mRNA	mediator of RNA polymerase II transcription subunit 33B-like(LOC108457903)	coding protein	psRNATarget
XM_017771013.1	ncRNA:21   UUUGGGAUCAGGUUAGUAACU   1   *||*|=||||||||||||||| targets:3733   UAAGCUUAGUCCAAUCAUUGA   3753 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum mediator of RNA polymerase II transcription subunit 33B-like (LOC108469904), mRNA	mediator of RNA polymerase II transcription subunit 33B-like(LOC108469904)	coding protein	psRNATarget
XM_017784884.1	ncRNA:21   UUUGGGAUCAGGUUAGUAACU   1   |||===||||||||||||||| targets:702   AAAUUUUAGUCCAAUCAUUGA   722 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108481805 (LOC108481805), mRNA	uncharacterized LOC108481805(LOC108481805)	coding protein	psRNATarget