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BaseInfo

ncRNA ID novel_gar_miR1600
Species Gossypium arboreum
Class miRNA
Genome position Chr1:129410514-129410698 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 162 - AUAAGGAUGACGUGGAAUCACAAU - 185
Stem-loop(if miRNA) --                       A      -  C                           C       C    A     -AG     UUUG
  UGUGAUUUUACGUCAUCCUUAUC UUUUUC AA GGGAGAAUGACAAAUCAGAUUUUUUCU CUAAUUU UAGU UUUUU   UUGGA    G
  ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||| |||| |||||   |||||
  ACACUAAGGUGCAGUAGGAAUAG GGAAAG UU CCCUCUUACUGUUUAGUCUAAAAAGGA GAUUAAA GUCG AAAAA   GACUU    A
UA                       -      A  A                           A       A    A     GAG     UUUU
Stem-loop sequence UGUGAUUUUACGUCAUCCUUAUCAUUUUUCAACGGGAGAAUGACAAAUCAGAUUUUUUCUCCUAAUUUCUAGUAUUUUUAGUUGGAUUUGGAUUUUUUCAGGAGAAAAAAGCUGAAAAUUAGAAGGAAAAAUCUGAUUUGUCAUUCUCCCAUUAGAAAGGGAUAAGGAUGACGUGGAAUCACAAU