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BaseInfo

ncRNA ID novel_gar_miR1596
Species Gossypium arboreum
Class miRNA
Genome position Chr11:55804068-55804137 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 21
Mature sequence(if miRNA) 1 - CGGAGCGGCCGGUCUUGUCAU - 21
Stem-loop(if miRNA) --     C  CC       U    - C   UG   
  CGGAG GG  GGUCUUG CAUC C UUU  CCCA
  ||||| ||  ||||||| |||| | |||  |||U
  GCUUU CC  CUAGGAC GUAG G GGG  GGGU
UA     U  AA       U    A U   GU   
Stem-loop sequence CGGAGCGGCCGGUCUUGUCAUCCCUUUUGCCCAUUGGGUGGGGUGAGAUGUCAGGAUCAACCUUUUCGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753790.1
ncRNA:21   UACUGUUCUGGCCGGCGAGGC   1
  |||||||||||||||||||||
targets:1925   AUGACAAGACCGGCCGCUCCG   1945

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455200 (LOC108455200), mRNA uncharacterized LOC108455200(LOC108455200) coding protein psRNATarget
XM_017753787.1
ncRNA:21   UACUGUUCUGGCCGGCGAGGC   1
  |||||||||||||||||||||
targets:2168   AUGACAAGACCGGCCGCUCCG   2188

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455194 (LOC108455194), mRNA uncharacterized LOC108455194(LOC108455194) coding protein psRNATarget