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BaseInfo

ncRNA ID ath-miRf11100-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - ACUCGACCUGGUGGUCGAGUG - NA
Stem-loop(if miRNA) -GA          GG         -    --- G    AG     CU A    G U
   UACUCGACCU  UGGUCGAGU GAAG   U AUUG  UGACU  C UGGU G A
   ||||||||||  ||||||||| ||||   | ||||  |||||  | |||| |
   GUGAGCUGGG  ACCAGCUCA CUUC   A UGGU  ACUGG  G ACCG C U
CUG          GG         U    UGA G    GA     UG -    G U
Stem-loop sequence GAUACUCGACCUGGUGGUCGAGUGAAGUGAUUGAGUGACUCUCAUGGUGGUAUUCGGCCAGGUGGUCAAGUGGUGAAGUCUUCUACUCGACCAGGGGGUCGAGUGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183194.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||||||||||||||||||
targets:450   CACUCGACCACCAGGUCGAGU   470

0.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||||||*|||||||||||
targets:1105   CACUCGACCCCCAGGUCGAGU   1125

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
NM_103391.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||||||||*|||||||||
targets:1151   CACUCGACCACGAGGUCGAGU   1171

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
AY227642.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  ||||||||*||||||||||||
targets:809   CACUCGACAACCAGGUCGAGU   829

1.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||||||||*|||||||||
targets:1527   CACUCGACCACGAGGUCGAGU   1547

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  =|||||||||||||||||*||
targets:109   UACUCGACCACCAGGUCGCGU   129

1.5 Arabidopsis thaliana NA coding protein psRNATarget
BT025674.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  =||||||||*|||||||||||
targets:188   UACUCGACCCCCAGGUCGAGU   208

1.5 Arabidopsis thaliana NA coding protein psRNATarget
BT014714.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  =||||||||*|||||||||||
targets:137   UACUCGACCCCCAGGUCGAGU   157

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  =||||||||*|||||||||||
targets:137   UACUCGACCCCCAGGUCGAGU   157

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT012022.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:35   CACUCUACCAACAGGUCGAGU   55

2.5 Arabidopsis thaliana At2g10890 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:318   CACUCUACCAACAGGUCGAGU   338

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:366   CACUCUACCAACAGGUCGAGU   386

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:414   CACUCUACCAACAGGUCGAGU   434

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*|||||||*|||||||
targets:657   CACUCUACCACCAAGUCGAGU   677

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:693   CACUCUACCAACAGGUCGAGU   713

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:741   CACUCUACCAACAGGUCGAGU   761

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:789   CACUCUACCAACAGGUCGAGU   809

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*|||||||*|||||||
targets:1032   CACUCUACCACCAAGUCGAGU   1052

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:693   CACUCUACCAACAGGUCGAGU   713

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:741   CACUCUACCAACAGGUCGAGU   761

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:789   CACUCUACCAACAGGUCGAGU   809

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*|||||||*|||||||
targets:1032   CACUCUACCACCAAGUCGAGU   1052

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
DQ069808.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*|||||*|||||||||
targets:45   CACUCAACCACAAGGUCGAGU   65

2.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
DQ069808.1
ncRNA:21   GUGAGCUGGUGGUCCAGCUCA   1
  |||||*||||*||||||||||
targets:146   CACUCUACCAACAGGUCGAGU   166

2.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
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