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BaseInfo

ncRNA ID novel_gar_miR1588
Species Gossypium arboreum
Class miRNA
Genome position Chr1:105425872-105426053 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 159 - AUAUAGGAUCGUUGUUAAGGAGGU - 182
Stem-loop(if miRNA) -      -  UG UA               UC           A   A        AAUG   ---AGA   -- GGGAUGAAAGUAGAUUUUU
 CUUCCU AA  G  GUCUUAUGUGGCAGU  AAAUAAGUUUU AAU UCAACUUA    GUC      UGC  U                   A
 |||||| ||  |  |||||||||||||||  ||||||||||| ||| ||||||||    |||      |||  |
 GGAGGA UU  U  UAGGAUAUACCGUUA  UUUAUUUAAAA UUA AGUUGAAU    UAG      CUG  A                   A
U      A  GU GC               GA           C   C        -CUA   AAUGCA   UC AGUUUAAUUUAAAUAAAUU
Stem-loop sequence CUUCCUAAUGGUAGUCUUAUGUGGCAGUUCAAAUAAGUUUUAAAUAUCAACUUAAAUGGUCAGAUGCUGGGAUGAAAGUAGAUUUUUAAUUAAAUAAAUUUAAUUUGAACUGUCACGUAAGAUAUCUAAGUUGACAUUCAAAAUUUAUUUAGAUUGCCAUAUAGGAUCGUUGUUAAGGAGGU