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BaseInfo

ncRNA ID	novel_gar_miR1585
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:99170423-99170569 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	124 - AAAGAGAUAAAAAUGACGUGGAAU - 147
Stem-loop(if miRNA)	--         ACCC               C     CA         ----A             ---UU     UU   UCCACGUUA    UAUUUUUUUUUAAUA GAGAA  ACAAAUUAA     UUUUUUCUUUUGA     UUUAG  G   |||||||||    ||||||||||||||| |||||  |||||||||     |||||||||||||     |||||   AGGUGCAGU    AUAGAGAAAGAUUAU CUUUU  UGUUUAGUU     AAAAAAGAGAAUU     AAGUU  A UA         AAAA               U     AC         GAGAA             UUUAU     UA
Stem-loop sequence	UCCACGUUAACCCUAUUUUUUUUUAAUACGAGAACAACAAAUUAAAUUUUUUCUUUUGAUUUUUAGUUGAAUUUGAAUAUUUUUAAGAGAAAAAAAAGAGUUGAUUUGUCAUUUUCUUAUUAGAAAGAGAUAAAAAUGACGUGGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017763571.1	ncRNA:24   UAAGGUGCAGUAAAAAUAGAGAAA   1   |||||||||=||||*||||||||| targets:1793   AUUCCACGUUAUUUCUAUCUCUUU   1816 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X2, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763572.1	ncRNA:24   UAAGGUGCAGUAAAAAUAGAGAAA   1   |||||||||=||||*||||||||| targets:1792   AUUCCACGUUAUUUCUAUCUCUUU   1815 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X3, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763570.1	ncRNA:24   UAAGGUGCAGUAAAAAUAGAGAAA   1   |||||||||=||||*||||||||| targets:1781   AUUCCACGUUAUUUCUAUCUCUUU   1804 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X1, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget