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BaseInfo

ncRNA ID	novel_gar_miR1577
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:62669364-62669583 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	200 - ACAAUCUGACUCCUACUACGG - 220
Stem-loop(if miRNA)	--   C   A    U     C                GC    -A   -A       GC    U  C       A   U  G   C     -A       GA     ----  G   GUA UAG AGUC GAUUG AUUUUGUCUCCUUUAC  AAAA  AUG  AAAAUUA  CCCU UA GUUAGAU AAA AG AAA UGGUC  UUCUGUU  AAAUU    CU U   ||| ||| |||| ||||| ||||||||||||||||  ||||  |||  |||||||  |||| || ||||||| ||| || ||| |||||  |||||||  |||||    ||   CAU AUC UCAG CUAAC UAAAACGGGGGAGAUG  UUUU  UAC  UUUUAAU  GGGA AU CAAUCUA UUU UC UUU ACCAG  AGGAUAA  UUUAA    GA C GG   C   C    U     A                -A    CC   CC       UA    U  A       G   U  G   A     GA       AA     UCUU  C
Stem-loop sequence	GUACUAGAAGUCUGAUUGCAUUUUGUCUCCUUUACGCAAAAAAUGAAAAAUUAGCCCCUUUACGUUAGAUAAAAUAGGAAACUGGUCAUUCUGUUGAAAAUUCUGUCCAGUUCUAAUUUAAAAUAGGAAGGACCAAUUUGCUUUUUGAUCUAACAUAUAGGGAUUAAUUUUCCCAUCCUUUUAGUAGAGGGGGCAAAAUACAAUCUGACUCCUACUACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017769675.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||*||||||||||||||* targets:954   UUGUAUUAGGAGUCAGAUUGC   974 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X1, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017769676.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||*||||||||||||||* targets:954   UUGUAUUAGGAGUCAGAUUGC   974 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X2, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017754991.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||||=|*||||||||||| targets:1434   UUGUAGUGGAAGUCAGAUUGU   1454 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethanolamine-phosphate cytidylyltransferase-like (LOC108456383), transcript variant X3, mRNA	ethanolamine-phosphate cytidylyltransferase-like(LOC108456383)	coding protein	psRNATarget
XM_017768158.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   |=|||*||*|||||||||||| targets:1522   CUGUACUAAGAGUCAGAUUGU   1542 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X3, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768156.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   |=|||*||*|||||||||||| targets:1525   CUGUACUAAGAGUCAGAUUGU   1545 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X1, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768157.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   |=|||*||*|||||||||||| targets:1638   CUGUACUAAGAGUCAGAUUGU   1658 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X2, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017754642.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||*|||||||||*||||| targets:726   UUGUACUAGGAGUCAAAUUGU   746 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017757759.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||*|||||||||*||||| targets:1386   UUGUAUUAGGAGUCAAAUUGU   1406 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==|||*|||||||||*||||| targets:1446   UUGUAUUAGGAGUCAAAUUGU   1466 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017768662.1	ncRNA:21   GGCAUCAUCCUCAGUCUAACA   1   ==*||*||||||||||||||* targets:1721   UUAUACUAGGAGUCAGAUUGC   1741 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108467851 (LOC108467851), mRNA	uncharacterized LOC108467851(LOC108467851)	coding protein	psRNATarget