Search result

BaseInfo

ncRNA ID	novel_gar_miR1575
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:48550899-48551059 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	141 - UUAAUAUAGUAGAGAGACCAA - 161
Stem-loop(if miRNA)	-- A  C          C               A     -G     AAAUUU    G         -GG   AACUAAUAAUA    A   G UC CUCUACUAUA UAAAAUUUGGGAUUU GUCCU  GUACU      AUUU GCAUAAUUU   GCU           UUAC A   | || |||||||||| ||||||||||||||| |||||  |||||      |||| |||||||||   |||           ||||   C AG GAGAUGAUAU AUUUUAAAUUCUAGA CAGGG  UAUGA      UAAA CGUAUUAAA   UGA           AAUG A AA C  A          A               A     AA     ---AAU    A         ACA   ----------G    A
Stem-loop sequence	GAUCCCUCUACUAUACUAAAAUUUGGGAUUUAGUCCUGGUACUAAAUUUAUUUGGCAUAAUUUGGGCUAACUAAUAAUAUUACAAAAGUAAGAGUACAAAAUUAUGCAAAAUUAAAGUAUAAGGGACAAGAUCUUAAAUUUUAAUAUAGUAGAGAGACCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017790637.1	ncRNA:21   AACCAGAGAGAUGAUAUAAUU   1   *||||=|||||||*||||||| targets:1884   GUGGUUUCUCUACAAUAUUAA   1904 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine hydroxymethyltransferase 3, chloroplastic-like (LOC108486534), mRNA	serine hydroxymethyltransferase 3, chloroplastic-like(LOC108486534)	coding protein	psRNATarget
XM_017767267.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:882   CUGGUACCCUCUACUAUAUUAA   903 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X5, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767270.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:490   CUGGUACCCUCUACUAUAUUAA   511 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X8, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767266.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:882   CUGGUACCCUCUACUAUAUUAA   903 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X4, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767269.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:743   CUGGUACCCUCUACUAUAUUAA   764 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X7, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767265.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:882   CUGGUACCCUCUACUAUAUUAA   903 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X3, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767264.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:882   CUGGUACCCUCUACUAUAUUAA   903 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X2, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767263.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:882   CUGGUACCCUCUACUAUAUUAA   903 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X1, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget
XM_017767268.1	ncRNA:21   AACCA-GAGAGAUGAUAUAAUU   1   *||||-|*|||||||||||||| targets:910   CUGGUACCCUCUACUAUAUUAA   931 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC108466905), transcript variant X6, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2(LOC108466905)	coding protein	psRNATarget