Search result

BaseInfo

ncRNA ID novel_gar_miR1569
Species Gossypium arboreum
Class miRNA
Genome position Chr9:47549899-47549985 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 64 - AAUGAGGUUGAGAUUUUGACGUGU - 87
Stem-loop(if miRNA) --AA                A      A    A    -G    U
    UGAGGUUGAGAUUUUG CGUGUC CUUU UGUU  UAUU A
    |||||||||||||||| |||||| |||| ||||  |||| A
    ACUUUAACUCUAAAAC GUGCGG GAAA AUAA  AUAA A
GUUC                A      -    A    AA    A
Stem-loop sequence AAUGAGGUUGAGAUUUUGACGUGUCACUUUAUGUUGUAUUUAAAAAAUAAAAAUAAAAAGGGCGUGACAAAAUCUCAAUUUCACUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017763429.1
ncRNA:24   UGUGCAGUUUUAGAGUUGGAGUAA   1
  |*|*||*||||||*||||||||||
targets:7   AAAAGUAAAAAUCCCAACCUCAUU   30

2.5 PREDICTED: Gossypium arboreum galactinol synthase 2-like (LOC108463498), mRNA galactinol synthase 2-like(LOC108463498) coding protein psRNATarget