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BaseInfo

ncRNA ID novel_gar_miR1562
Species Gossypium arboreum
Class miRNA
Genome position Chr9:68829458-68829536 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 56 - AUAGUUGGGUGACUAAAAAAGACA - 79
Stem-loop(if miRNA) --               -     --GCU     AAAAA    A
  UCUUUUUUGGUUACU AGCUG     GAUUU     UGGG A
  ||||||||||||||| |||||     |||||     ||||
  AGAAAAAAUCAGUGG UUGAU     CUGAA     AUCC C
AC               G     AGAAU     ----A    A
Stem-loop sequence UCUUUUUUGGUUACUAGCUGGCUGAUUUAAAAAUGGGAACACCUAAAAGUCUAAGAUAGUUGGGUGACUAAAAAAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017774698.1
ncRNA:24   ACAGAAAAAAUCAGUGGGUUGAUA   1
  |*||*|||||=|||||=|||||||
targets:803   UUUCCUUUUUGGUCACUCAACUAU   826

2.5 PREDICTED: Gossypium arboreum NDR1/HIN1-like protein 12 (LOC108473157), mRNA NDR1/HIN1-like protein 12(LOC108473157) coding protein psRNATarget