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BaseInfo

ncRNA ID	novel_gar_miR1561
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:31258943-31259132 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UUUUAUAAUGUUAUUAGUAGG - 21
Stem-loop(if miRNA)	--                      C      AAAAACUCUA      G  -ACAA          ---AAC     CUCUUUUUAAUUUUAUACAAU   UUUUAUAAUGUUAUUAGUAGGU UAAAUU          UUAGUU CU     UUAAAGUGAU      GUAAA                     A   |||||||||||||||||||||| ||||||          |||||| ||     ||||||||||      |||||                     A   AAAAUAUUACAAUAAUUAUUUA AUUUAA          AAUCAA GA     AAUUUCACUA      UAAAA                     U UU                      A      CUAUUAUAAC      -  ACAUC          AUACAC     AAAAAAUUUUAUACAUUUAAA
Stem-loop sequence	UUUUAUAAUGUUAUUAGUAGGUCUAAAUUAAAAACUCUAUUAGUUGCUACAAUUAAAGUGAUAACGUAAACUCUUUUUAAUUUUAUACAAUAAUAAAUUUACAUAUUUUAAAAAAAAAAUCACAUAAUCACUUUAACUACAAGAACUAACAAUAUUAUCAAUUUAAAUUUAUUAAUAACAUUAUAAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017787132.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   ||||||||||||||||||||| targets:2860   CCUACUAAUAACAUUAUAAAA   2880 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3-like (LOC108483631), transcript variant X5, mRNA	ABC transporter G family member 3-like(LOC108483631)	coding protein	psRNATarget
XM_017787130.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   ||||||||||||||||||||| targets:2884   CCUACUAAUAACAUUAUAAAA   2904 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3-like (LOC108483631), transcript variant X4, mRNA	ABC transporter G family member 3-like(LOC108483631)	coding protein	psRNATarget
XM_017787127.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   ||||||||||||||||||||| targets:2901   CCUACUAAUAACAUUAUAAAA   2921 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3-like (LOC108483631), transcript variant X1, mRNA	ABC transporter G family member 3-like(LOC108483631)	coding protein	psRNATarget
XM_017787128.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   ||||||||||||||||||||| targets:2925   CCUACUAAUAACAUUAUAAAA   2945 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3-like (LOC108483631), transcript variant X2, mRNA	ABC transporter G family member 3-like(LOC108483631)	coding protein	psRNATarget
XM_017787129.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   ||||||||||||||||||||| targets:2928   CCUACUAAUAACAUUAUAAAA   2948 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3-like (LOC108483631), transcript variant X3, mRNA	ABC transporter G family member 3-like(LOC108483631)	coding protein	psRNATarget
XM_017759140.1	ncRNA:21   GGAUGAUUAUUGUAAUAUUUU   1   |=||=||*||||||||||||| targets:942   CUUAUUAUUAACAUUAUAAAA   962 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum tropinone reductase-like 3 (LOC108459736), mRNA	tropinone reductase-like 3(LOC108459736)	coding protein	psRNATarget