Search result

BaseInfo

ncRNA ID novel_gar_miR1559
Species Gossypium arboreum
Class miRNA
Genome position Chr1:7443327-7443396 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 47 - UUGCUGACGUGGACAAAACGCUCC - 70
Stem-loop(if miRNA) --AA  C                  AAAC  G   U
    CG UUUGUCCACGUCAGCAAA    GU UCC U
    || ||||||||||||||||||    || |||
    GC AAACAGGUGCAGUCGUUU    CG AGG G
CCUC  A                  --CA  A   A
Stem-loop sequence AACGCUUUGUCCACGUCAGCAAAAAACGUGUCCUUGAGGAAGCACUUUGCUGACGUGGACAAAACGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:24   CCUCGCAAAACAGGUGCAGUCGUU   1
  |||||||||||||||=|||||||*
targets:6   GGAGCGUUUUGUCCAUGUCAGCAC   29

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget