ncRNA ID | novel_gar_miR1559 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:7443327-7443396 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180720 |
Length | 24 |
Mature sequence(if miRNA) | 47 - UUGCUGACGUGGACAAAACGCUCC - 70 |
Stem-loop(if miRNA) |
--AA  C                  AAAC  G   U     CG UUUGUCCACGUCAGCAAA    GU UCC U     || ||||||||||||||||||    || |||     GC AAACAGGUGCAGUCGUUU    CG AGG G CCUC  A                  --CA  A   A |
Stem-loop sequence | AACGCUUUGUCCACGUCAGCAAAAAACGUGUCCUUGAGGAAGCACUUUGCUGACGUGGACAAAACGCUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017784438.1 |
|
2.5 | PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA | serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) | coding protein | psRNATarget |