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BaseInfo

ncRNA ID novel_gar_miR1546
Species Gossypium arboreum
Class miRNA
Genome position Chr8:113736882-113737034 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 1 - AUAAAGACUGAUGUUGGGUAUGCC - 24
Stem-loop(if miRNA) --   AA    GA           ---CC   -------------     UGUAAUUGGAUAUGAUUUAUCAAGAUAGGAUUUGU
  AUA  GACU  UGUUGGGUAUG     GCA             AUCUA                                   C
  |||  ||||  |||||||||||     |||             |||||                                   C
  UAU  UUGA  AUAACUCAUAU     CGU             AGGUA                                   C
AG   AG    --           CAGUA   AAAGAUCAGAGUG     GUUCUCCGGAUUCUAUAACGAGGGUAAUACAUCCU
Stem-loop sequence AUAAAGACUGAUGUUGGGUAUGCCGCAAUCUAUGUAAUUGGAUAUGAUUUAUCAAGAUAGGAUUUGUCCCUCCUACAUAAUGGGAGCAAUAUCUUAGGCCUCUUGAUGGAGUGAGACUAGAAAUGCAUGACUAUACUCAAUAAGUUGAUAUGA