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BaseInfo

ncRNA ID ath-miR8180
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:2063848-2064061 [+]
Reference genome TAIR10
Source miRBase
Length 19
Mature sequence(if miRNA) 133 - UGCGGUGCGGGAGAAGUGC - 151
Stem-loop(if miRNA)     A      U     C              G  AA                     C            A      --  U   U    C   UC  C     A CA
AGUA CGAAAU CUUUA AUAUACAUGUGUAU UA  UAUUUUUGUUACUAUUUGAAC GCACCGCAUUUU UCCGCA  GU GAA CGCA GUC  CA UCGGA C  A
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UCAU GUUUUA GAGAU UAUAUGUAUACAUA AU  AUAAAAGCAAUGAUAAACUUG CGUGGCGUGAAG GGGCGU  CG UUU GCGU CAG  GU AGUCU G  U
    A      -     A              G  AC                     A            A      GG  U   -    -   UA  A     - AG
Stem-loop sequence AGUAACGAAAUUCUUUACAUAUACAUGUGUAUGUAAAUAUUUUUGUUACUAUUUGAACCGCACCGCAUUUUAUCCGCAGUUGAAUCGCACGUCUCCACUCGGAACCAAUGAGUCUGAAUGAUGACUGCGUUUUGCGGUGCGGGAGAAGUGCGGUGCAGUUCAAAUAGUAACGAAAAUACAUAGAUACAUAUGUAUAUAUAGAGAUUUUGAUACU

Reference

1 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).