ncRNA ID | ath-miR8180 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:2063848-2064061 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 19 |
Mature sequence(if miRNA) | 133 - UGCGGUGCGGGAGAAGUGC - 151 |
Stem-loop(if miRNA) |
    A      U     C              G  AA                     C            A      --  U   U    C   UC  C     A CA AGUA CGAAAU CUUUA AUAUACAUGUGUAU UA  UAUUUUUGUUACUAUUUGAAC GCACCGCAUUUU UCCGCA  GU GAA CGCA GUC  CA UCGGA C  A |||| |||||| ||||| |||||||||||||| ||  ||||||||||||||||||||| |||||||||||| ||||||  || ||| |||| |||  || ||||| | UCAU GUUUUA GAGAU UAUAUGUAUACAUA AU  AUAAAAGCAAUGAUAAACUUG CGUGGCGUGAAG GGGCGU  CG UUU GCGU CAG  GU AGUCU G  U     A      -     A              G  AC                     A            A      GG  U   -    -   UA  A     - AG |
Stem-loop sequence | AGUAACGAAAUUCUUUACAUAUACAUGUGUAUGUAAAUAUUUUUGUUACUAUUUGAACCGCACCGCAUUUUAUCCGCAGUUGAAUCGCACGUCUCCACUCGGAACCAAUGAGUCUGAAUGAUGACUGCGUUUUGCGGUGCGGGAGAAGUGCGGUGCAGUUCAAAUAGUAACGAAAAUACAUAGAUACAUAUGUAUAUAUAGAGAUUUUGAUACU |
1 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |