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BaseInfo

ncRNA ID novel_gar_miR1535
Species Gossypium arboreum
Class miRNA
Genome position Chr7:14250501-14250564 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 21
Mature sequence(if miRNA) 44 - AUUUGCUCUUUGAUCUAAUGC - 64
Stem-loop(if miRNA) --A             CUA   C C      UA
   UUUGCUCUUUGAU   AUG A AGGGAU  A
   |||||||||||||   ||| | ||||||
   AGAUGGGGAACUA   UAU U UUCCUA  U
AUA             --A   U U      UU
Stem-loop sequence AUUUGCUCUUUGAUCUAAUGCACAGGGAUUAAUUUAUCCUUUUUUAUAAUCAAGGGGUAGAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017757759.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *=||||*||||||||||||||
targets:1445   CUAUUAUAUCAAAGAGCAAAU   1465

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017757758.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *=||||*||||||||||||||
targets:1505   CUAUUAUAUCAAAGAGCAAAU   1525

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017766788.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|||||||||||||||||=||
targets:1103   ACAUUAGAUCAAAGAGCAGAU   1123

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108466432 (LOC108466432), mRNA uncharacterized LOC108466432(LOC108466432) coding protein psRNATarget
XM_017777449.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|=|||*||||||||||||||
targets:1628   ACGUUAAAUCAAAGAGCAAAU   1648

2.0 PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA cytochrome P450 71D10-like(LOC108475481) coding protein psRNATarget
XM_017754697.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  **=|||*||||||||||||||
targets:1369   AAGUUAUAUCAAAGAGCAAAU   1389

2.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017754696.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  **=|||*||||||||||||||
targets:1369   AAGUUAUAUCAAAGAGCAAAU   1389

2.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017752094.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|=|||||||||||||=||||
targets:1113   ACGUUAGAUCAAAGAGUAAAU   1133

2.5 PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA universal stress protein PHOS32-like(LOC108453792) coding protein psRNATarget
XM_017759173.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *||||||||||||||||||=*
targets:2486   ACAUUAGAUCAAAGAGCAAGC   2506

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA uncharacterized LOC108459768(LOC108459768) coding protein psRNATarget
XM_017760336.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|=||||||||||*|||||||
targets:2147   ACGUUAGAUCAAAAAGCAAAU   2167

2.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017760338.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|=||||||||||*|||||||
targets:2243   ACGUUAGAUCAAAAAGCAAAU   2263

2.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017785112.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  **||||||||||||||=|||*
targets:1178   AAAUUAGAUCAAAGAGUAAAC   1198

2.5 PREDICTED: Gossypium arboreum coenzyme Q-binding protein COQ10 homolog, mitochondrial-like (LOC108482007), mRNA coenzyme Q-binding protein COQ10 homolog, mitochondrial-like(LOC108482007) coding protein psRNATarget
XM_017784452.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *==||||||||||||||||*|
targets:1   AUGUUAGAUCAAAGAGCAAUU   21

2.5 PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA myb-related protein 305-like(LOC108481300) coding protein psRNATarget
XM_017785103.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *==|||||||||*||||||||
targets:919   AUGUUAGAUCAAUGAGCAAAU   939

2.5 PREDICTED: Gossypium arboreum actin-related protein 2/3 complex subunit 5A-like (LOC108481997), mRNA actin-related protein 2/3 complex subunit 5A-like(LOC108481997) coding protein psRNATarget
XM_017762937.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *=||||*|||||||||=||||
targets:1332   UUAUUACAUCAAAGAGUAAAU   1352

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108463007 (LOC108463007), mRNA uncharacterized LOC108463007(LOC108463007) coding protein psRNATarget
XM_017786219.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *=||||*|||||||||=||||
targets:1123   AUAUUAUAUCAAAGAGUAAAU   1143

2.5 PREDICTED: Gossypium arboreum protein bicaudal C homolog 1-A-like (LOC108483037), mRNA protein bicaudal C homolog 1-A-like(LOC108483037) coding protein psRNATarget
XM_017751149.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  **|*|||||=|||||||||||
targets:524   UAAAUAGAUUAAAGAGCAAAU   544

2.5 PREDICTED: Gossypium arboreum protein-L-isoaspartate O-methyltransferase 1 (LOC108453182), transcript variant X2, mRNA protein-L-isoaspartate O-methyltransferase 1(LOC108453182) coding protein psRNATarget
XM_017753157.1
ncRNA:21   CGUAAUCUAGUUUCUCGUUUA   1
  *|||||*|||||*||||||||
targets:807   ACAUUAUAUCAAUGAGCAAAU   827

2.5 PREDICTED: Gossypium arboreum peptide methionine sulfoxide reductase B5-like (LOC108454631), mRNA peptide methionine sulfoxide reductase B5-like(LOC108454631) coding protein psRNATarget
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