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BaseInfo

ncRNA ID novel_gar_miR1517
Species Gossypium arboreum
Class miRNA
Genome position Chr6:59112198-59112267 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 47 - UUGCUGACGUGGACAAAACGCUCU - 70
Stem-loop(if miRNA) --    C                  AA    AU  U
  AGCG UUUGUCCACGUCAGCAAA  ACGC  CC U
  |||| ||||||||||||||||||  ||||  ||
  UCGC AAACAGGUGCAGUCGUUU  UGCG  GG G
UC    A                  CG    --  A
Stem-loop sequence AGCGCUUUGUCCACGUCAGCAAAAAACGCAUCCUUGAGGGCGUGCUUUGCUGACGUGGACAAAACGCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:24   UCUCGCAAAACAGGUGCAGUCGUU   1
  =||||||||||||||=|||||||*
targets:6   GGAGCGUUUUGUCCAUGUCAGCAC   29

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget