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BaseInfo

ncRNA ID	ath-miRf11092-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UCAUGGUCGUGAUCGUGGUCAUC - NA
Stem-loop(if miRNA)	---     GU          GU   C      GU     UC  C     C GUGAUCAUCG   UCAUG  CGUGAUCGUG  CAU AUCGUG  CAUGG  AU AUCAU A ||||||||||   |||||  ||||||||||  ||| ||||||  |||||  || ||||| UACUGGUGGU   GGUGC  GUACUGGUAC  GUG UGGUGC  GUGCU  UA UGGUG U           GCU     UG          UG   C      UG     GC  C     C
Stem-loop sequence	GUGAUCAUCGUCAUGGUCGUGAUCGUGGUCAUCAUCGUGGUCAUGGUCAUCAUCAUCAUCGUGGUCAUCGUCGUGGUCGUGGUCGUGGUCAUGGUCAUGGUCGUGGUCGUGGUGGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001084864.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   ||||||||||||||||||||||| targets:301   GAUGACCACGAUCACGACCAUGA   323 Target Full Sequence	0.0	Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein partial mRNA	Tetratricopeptide repeat (TPR)-like superfamily protein(AT3G63095)	coding protein	psRNATarget
BX833851.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=||||||||||||||||||||= targets:153   GGUGACCACGAUCACGACCAUGG   175 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL7ZD01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_106696.4	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |||*||||=|||||||||||||| targets:1090   GAUCACCAUGAUCACGACCAUGA   1112 Target Full Sequence	1.0	Arabidopsis thaliana plastid transcriptionally active 17 (PTAC17), mRNA	plastid transcriptionally active 17(PTAC17)	coding protein	psRNATarget
BT014948.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |||*||||=|||||||||||||| targets:1046   GAUCACCAUGAUCACGACCAUGA   1068 Target Full Sequence	1.0	Arabidopsis thaliana At1g80480 gene, complete cds	NA	coding protein	psRNATarget
BX815504.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |||*||||=|||||||||||||| targets:1037   GAUCACCAUGAUCACGACCAUGA   1059 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZD07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT015396.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |||*||||=|||||||||||||| targets:928   GAUCACCAUGAUCACGACCAUGA   950 Target Full Sequence	1.0	Arabidopsis thaliana At1g80480 gene, complete cds	NA	coding protein	psRNATarget
NM_116738.2	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   *|*|||||=*||||||||||||| targets:337   CAGGACCAUCAUCACGACCAUGA   359 Target Full Sequence	2.0	Arabidopsis thaliana serine/arginine repetitive matrix-like protein (DUF761) mRNA	serine/arginine repetitive matrix-like protein (DUF761)(AT4G04990)	coding protein	psRNATarget
NM_001343021.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=|||||||||||||*||||||= targets:294   GGUGACCACGAUCACCACCAUGG   316 Target Full Sequence	2.5	Arabidopsis thaliana Calcium-binding EF hand family protein mRNA	Calcium-binding EF hand family protein(AT5G08580)	coding protein	psRNATarget
NM_120945.3	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=|||||||||||||*||||||= targets:294   GGUGACCACGAUCACCACCAUGG   316 Target Full Sequence	2.5	Arabidopsis thaliana Calcium-binding EF hand family protein mRNA	Calcium-binding EF hand family protein(AT5G08580)	coding protein	psRNATarget
AY059804.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=|||||||||||||*||||||= targets:187   GGUGACCACGAUCACCACCAUGG   209 Target Full Sequence	2.5	Arabidopsis thaliana Unknown protein (MAH20.14) mRNA, complete cds	NA	coding protein	psRNATarget
BX829996.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=|||||||||||||*||||||= targets:165   GGUGACCACGAUCACCACCAUGG   187 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT000034.1	ncRNA:23   CUACUGGUGCUAGUGCUGGUACU   1   |=|||||||||||||*||||||= targets:82   GGUGACCACGAUCACCACCAUGG   104 Target Full Sequence	2.5	Arabidopsis thaliana Unknown protein (At5g08580) mRNA, complete cds	NA	coding protein	psRNATarget