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BaseInfo

ncRNA ID	novel_gar_miR1500
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:80468700-80468762 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	23
Mature sequence(if miRNA)	41 - AAGUACUUGUAGUUGGACCGAUG - 63
Stem-loop(if miRNA)	--    A   U      G      ----     A   UUGG UCA AUUACA AGUACU    GAGUC A   |||| ||| |||||| ||||||    ||||| A   AGCC GGU UGAUGU UCAUGA    CUCGG A GU    A   -      -      AGGG     C
Stem-loop sequence	UUGGAUCAUAUUACAGAGUACUGAGUCAAAACGGCUCGGGAAGUACUUGUAGUUGGACCGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017782712.1	ncRNA:23   GUAGCCAGGUUGAUGUUCAUGAA   1   *|*=||||*|||||||||||||* targets:370   AAGUGGUCAAACUACAAGUACUA   392 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum probable protein phosphatase 2C 60 (LOC108479875), transcript variant X3, mRNA	probable protein phosphatase 2C 60(LOC108479875)	coding protein	psRNATarget
XM_017782710.1	ncRNA:23   GUAGCCAGGUUGAUGUUCAUGAA   1   *|*=||||*|||||||||||||* targets:368   AAGUGGUCAAACUACAAGUACUA   390 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum probable protein phosphatase 2C 60 (LOC108479875), transcript variant X1, mRNA	probable protein phosphatase 2C 60(LOC108479875)	coding protein	psRNATarget
XM_017781976.1	ncRNA:23   GUAGCCAGGUUGAUGUUCAUGAA   1   |||-||||||||||||||||*|* targets:738   CAU-GGUCCAACUACAAGUAAUA   759 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 17 (LOC108479404), mRNA	zinc finger CCCH domain-containing protein 17(LOC108479404)	coding protein	psRNATarget
XM_017768007.1	ncRNA:23   GUAGCCAGGUUGAUGUUCAUGAA   1   *||||***||||||||||||||| targets:935   AAUCGAGACAACUACAAGUACUU   957 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum geraniol 8-hydroxylase-like (LOC108467407), mRNA	geraniol 8-hydroxylase-like(LOC108467407)	coding protein	psRNATarget