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BaseInfo

ncRNA ID novel_gar_miR1495
Species Gossypium arboreum
Class miRNA
Genome position Chr1:107377737-107377780 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719;SRR3180721
Length 21
Mature sequence(if miRNA) 1 - CAGUAGAAAUAGAUGGAAUUU - 21
Stem-loop(if miRNA) --AA      C    G     U
    UUCAUC AUUU UACUG U
    |||||| |||| |||||
    AGGUAG UAAA AUGAC A
UUUA      A    G     A
Stem-loop sequence AAUUCAUCCAUUUGUACUGUUAACAGUAGAAAUAGAUGGAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017755393.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||==||||||||||||||
targets:2185   AAAUUUUAUCUAUUUCUACUG   2205

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X3, mRNA uncharacterized LOC108456750(LOC108456750) coding protein psRNATarget
XM_017755392.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||==||||||||||||||
targets:2287   AAAUUUUAUCUAUUUCUACUG   2307

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X2, mRNA uncharacterized LOC108456750(LOC108456750) coding protein psRNATarget
XM_017755391.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||==||||||||||||||
targets:2289   AAAUUUUAUCUAUUUCUACUG   2309

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X1, mRNA uncharacterized LOC108456750(LOC108456750) coding protein psRNATarget
XM_017760336.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=||||||||||||||*
targets:2184   AAAUUUCAUCUAUUUCUACUA   2204

2.0 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017760338.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=||||||||||||||*
targets:2280   AAAUUUCAUCUAUUUCUACUA   2300

2.0 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017753535.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||=|||||
targets:1612   AAAUUUCAUCUAUUUUUACUG   1632

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108454910 (LOC108454910), transcript variant X3, mRNA uncharacterized LOC108454910(LOC108454910) coding protein psRNATarget
XM_017790232.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  ||||||=|||||||||||=||
targets:2447   AAAUUCUAUCUAUUUCUAUUG   2467

2.5 PREDICTED: Gossypium arboreum lupeol synthase-like (LOC108486269), mRNA lupeol synthase-like(LOC108486269) coding protein psRNATarget
XM_017759173.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=||||*||||||||||
targets:2523   AAAUUUCAUCAAUUUCUACUG   2543

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA uncharacterized LOC108459768(LOC108459768) coding protein psRNATarget
XM_017782061.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2089   AAAUUUCAUCUAUUUGUACUG   2109

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X7, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782054.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2089   AAAUUUCAUCUAUUUGUACUG   2109

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X1, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782060.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2089   AAAUUUCAUCUAUUUGUACUG   2109

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X6, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782059.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2089   AAAUUUCAUCUAUUUGUACUG   2109

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X5, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782058.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2089   AAAUUUCAUCUAUUUGUACUG   2109

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X4, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782064.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  |||||=|||||||||*|||||
targets:2068   AAAUUUCAUCUAUUUGUACUG   2088

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X10, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017759504.1
ncRNA:21   UUUAAGGUAGAUAAAGAUGAC   1
  *|*||||||||||||||||*|
targets:904   CAUUUCCAUCUAUUUCUACAG   924

2.5 PREDICTED: Gossypium arboreum transcription factor bHLH140 (LOC108460140), mRNA transcription factor bHLH140(LOC108460140) coding protein psRNATarget
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