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BaseInfo

ncRNA ID novel_gar_miR1491
Species Gossypium arboreum
Class miRNA
Genome position Chr10:44323456-44323561 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 24
Mature sequence(if miRNA) 1 - ACAAUGUUUUGUGAUAGUCAGAGU - 24
Stem-loop(if miRNA) --CA          U     -     AAAAA   AUUU    AAAGAG   CAUU  U
    UGGCUAUUAC GAGGC UUGUA     GUU    GGUU      ACU    GG G
    |||||||||| ||||| |||||     |||    ||||      |||    ||
    ACUGAUAGUG UUUUG AACAU     UAG    CCAG      UGA    UC A
UGAG          -     U     --AAC   ACUU    ---AAA   ---U  A
Stem-loop sequence CAUGGCUAUUACUGAGGCUUGUAAAAAAGUUAUUUGGUUAAAGAGACUCAUUGGUGAACUUAGUAAAGACCUUCAGAUCAAUACAAUGUUUUGUGAUAGUCAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017751453.1
ncRNA:24   UGAGACUGAUAGUGUUUUGUAACA   1
  |*|||||=|*|||||||||||||*
targets:180   AAUCUGAUUCUCACAAAACAUUGA   203

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108453379 (LOC108453379), mRNA uncharacterized LOC108453379(LOC108453379) coding protein psRNATarget