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BaseInfo

ncRNA ID novel_gar_miR1486
Species Gossypium arboreum
Class miRNA
Genome position Chr11:9630728-9630789 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 24
Mature sequence(if miRNA) 39 - GGAAAUUAUUUUUGAGAUUGAGGA - 62
Stem-loop(if miRNA) ---  -AA   A      A       GAAA   C
   GG   AUU UUUUUG GAUUGAG    UUC A
   ||   ||| |||||| |||||||    ||| G
   CC   UAA AAGGAC CUAAUUC    AAG C
CUU  AUG   -      -       ---A   U
Stem-loop sequence GGAAAUUAUUUUUGAGAUUGAGGAAAUUCCAGCUGAAACUUAAUCCAGGAAAAUGUACCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754663.1
ncRNA:24   AGGAGUUAGAGUUUUUAUUAAAGG   1
  |***=|||||=||||||||||||=
targets:1656   UGAAUAAUCUUAAAAAUAAUUUCU   1679

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108456071 (LOC108456071), mRNA uncharacterized LOC108456071(LOC108456071) coding protein psRNATarget