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BaseInfo

ncRNA ID	novel_gar_miR1480
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:62622451-62622668 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	21
Mature sequence(if miRNA)	1 - GAUUUAACGUAUAGGGACUAA - 21
Stem-loop(if miRNA)	--     G     U    U          U    A     U   C        C   C     G  AAUUGACA      AUGGAAUAACCAAAUAGUGAUACGUGGCAUG   AGUCC UAUAU UUAG UCAAAGAGCA AUUG UCCUU CUG UAAAAAUU CAU CAUUU UA        UGGCUG                               C   ||||| ||||| |||| |||||||||| |||| ||||| ||| |||||||| ||| ||||| ||        ||||||                               C   UCAGG AUAUG AAUU AGUUUCUCGU UGAC AGGAA GAU AUUUUUAA GUA GUAAA AU        AUUUUU                               A AA     G     C    U          U    C     -   A        A   A     G  ----GACA      GGCCAGGGAUAUACAAUCGUACUACAUGUGA
Stem-loop sequence	AGUCCGUAUAUUUUAGUUCAAAGAGCAUAUUGAUCCUUUCUGCUAAAAAUUCCAUCCAUUUGUAAAUUGACAUGGCUGAUGGAAUAACCAAAUAGUGAUACGUGGCAUGCCAAGUGUACAUCAUGCUAACAUAUAGGGACCGGUUUUUAACAGUAGAAAUGAAUGAAAUUUUUAAUAGAAGGACCAGUUUGCUCUUUGAUUUAACGUAUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017784200.1	ncRNA:21   AAUCAGGGAUAUGCAAUUUAG   1   |||||||=||||||||||||| targets:2352   UUAGUCCUUAUACGUUAAAUC   2372 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At5g13270, chloroplastic (LOC108481035), mRNA	pentatricopeptide repeat-containing protein At5g13270, chloroplastic(LOC108481035)	coding protein	psRNATarget
XM_017752094.1	ncRNA:21   AAUCAGGGAUAUGCAAUUUAG   1   *||||||||||||||||=||| targets:1102   GUAGUCCCUAUACGUUAGAUC   1122 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017764561.1	ncRNA:21   AAUCAGGGAUAUGCAAUUUAG   1   *||||||=|||||*||||||| targets:1147   GUAGUCCUUAUACCUUAAAUC   1167 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like (LOC108464319), transcript variant X1, mRNA	N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like(LOC108464319)	coding protein	psRNATarget