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BaseInfo

ncRNA ID	novel_gar_miR1471
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:73936055-73936142 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719;SRR3180721
Length	21
Mature sequence(if miRNA)	68 - AGAAUCUAGUUUUUCUCUUGC - 88
Stem-loop(if miRNA)	---A                 UG   - -AUUAUU         C     GAAUCUAGUUUUUCUCU  CUC C       CAUAUUUUC U     |||||||||||||||||  ||| |       ||||||||| U     CUUAGAUCAAAGAGGGA  GAG G       GUAUAAAAG G AAUA                 GU   A AACUUCU         U
Stem-loop sequence	AGAAUCUAGUUUUUCUCUUGCUCCAUUAUUCAUAUUUUCCUUGUGAAAAUAUGUCUUCAAGAGAGUGAGGGAGAAACUAGAUUCAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017778350.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   **||||||=|||||||||||* targets:390   UAAAGAGAGAAACUAGAUUCA   410 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108476209 (LOC108476209), mRNA	uncharacterized LOC108476209(LOC108476209)	coding protein	psRNATarget
XM_017776312.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   |||||*|||||||*||||||| targets:780   GCAAGUGAAAAACAAGAUUCU   800 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein At4g06598 (LOC108474401), mRNA	uncharacterized protein At4g06598(LOC108474401)	coding protein	psRNATarget
XM_017761437.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   *|||||||||*|||||||||* targets:145   UCAAGAGAAACACUAGAUUCA   165 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ninja-family protein AFP3-like (LOC108461565), mRNA	ninja-family protein AFP3-like(LOC108461565)	coding protein	psRNATarget
XM_017761489.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   *|||||||||*|||||||||* targets:151   UCAAGAGAAACACUAGAUUCA   171 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ninja-family protein AFP3-like (LOC108461602), mRNA	ninja-family protein AFP3-like(LOC108461602)	coding protein	psRNATarget
XM_017779986.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   *||||*|||||||*||||||| targets:676   ACAAGUGAAAAACAAGAUUCU   696 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein At4g06598-like (LOC108477441), transcript variant X2, mRNA	uncharacterized protein At4g06598-like(LOC108477441)	coding protein	psRNATarget
XM_017779987.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   *||||*|||||||*||||||| targets:797   ACAAGUGAAAAACAAGAUUCU   817 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein At4g06598-like (LOC108477441), transcript variant X3, mRNA	uncharacterized protein At4g06598-like(LOC108477441)	coding protein	psRNATarget
XM_017779985.1	ncRNA:21   CGUUCUCUUUUUGAUCUAAGA   1   *||||*|||||||*||||||| targets:797   ACAAGUGAAAAACAAGAUUCU   817 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein At4g06598-like (LOC108477441), transcript variant X1, mRNA	uncharacterized protein At4g06598-like(LOC108477441)	coding protein	psRNATarget