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BaseInfo

ncRNA ID novel_gar_miR1453
Species Gossypium arboreum
Class miRNA
Genome position Chr6:34437122-34437193 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 21
Mature sequence(if miRNA) 1 - UGACAUGGCAAAAAUGCUCCC - 21
Stem-loop(if miRNA) --              CA      A   --G     A
  GAGCGUUUUUGCCA  UCAGUA AGA   UGUCC C
  ||||||||||||||  |||||| |||   |||||
  CUCGUAAAAACGGU  AGUCGU UUU   GCGGG G
CC              AC      G   AGU     A
Stem-loop sequence GAGCGUUUUUGCCACAUCAGUAAAGAGUGUCCACGAGGGCGUGAUUUGUGCUGACAUGGCAAAAAUGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017776740.1
ncRNA:21   CCCUCGUAAAAACGGUACAGU   1
  ***||||||||||||||||=|
targets:1303   UUUAGCAUUUUUGCCAUGUUA   1323

2.5 PREDICTED: Gossypium arboreum bifunctional phosphatase IMPL2, chloroplastic (LOC108474730), mRNA bifunctional phosphatase IMPL2, chloroplastic(LOC108474730) coding protein psRNATarget