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BaseInfo

ncRNA ID novel_gar_miR1452
Species Gossypium arboreum
Class miRNA
Genome position Chr4:92227436-92227524 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AGUGAUAGUGUAACUAGUUGCUGA - 24
Stem-loop(if miRNA) --   C      C   U  -    AUG    AAAAUAAUUCAAAA
  GGC ACUGGU UAU CU UUAC   CCAU              C
  ||| |||||| ||| || ||||   ||||              A
  UCG UGAUCA AUG GA AGUG   GGUG              U
AG   U      -   U  U    AUA    ACGAACAAUGACAA
Stem-loop sequence GGCCACUGGUCUAUUCUUUACAUGCCAUAAAAUAAUUCAAAACAUAACAGUAACAAGCAGUGGAUAGUGAUAGUGUAACUAGUUGCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017748633.1
ncRNA:24   AGUCGUUGAUCAAUGUGAUAGUGA   1
  *=|*|*|=|=||||||||||||||
targets:373   AUAACCAUUGGUUACACUAUCACU   396

3.0 PREDICTED: Gossypium arboreum amino acid permease 6-like (LOC108450867), mRNA amino acid permease 6-like(LOC108450867) coding protein psRNATarget