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BaseInfo

ncRNA ID	novel_gar_miR1449
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:7413558-7413765 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	21
Mature sequence(if miRNA)	1 - UUGCUAUUUGAUCUAAUGUAC - 21
Stem-loop(if miRNA)	--             G     AC    UC  A            C    CAG  C     -AU      ----G    UU   UGU    AU    --U    A   C   ACAUUAGAUUAAA AGCAA  UAGU  UU CUGUUAAAAAUU CAUC   UU UACUA   AAAACU     GUCU  GUA   UAGC  GACA   ACAU UGG A   ||||||||||||| |||||  ||||  || |||||||||||| ||||   || |||||   ||||||     ||||  |||   ||||  ||||   |||| |||   UGUAAUCUAGUUU UCGUU  AUCA  AA GGUAAUUUUUAA GUAG   AA AUGAU   UUUUGA     CGGA  UAU   AUUG  CUGU   UGUA ACC C CA             A     GA    GA  A            A    AUA  C     AAU      ACAAA    -U   UUU    GC    CAU    C   G
Stem-loop sequence	ACAUUAGAUUAAAGAGCAAACUAGUUCUUACUGUUAAAAAUUCCAUCCAGUUCUACUAAUAAAACUGGUCUUUGUAUGUUAGCAUGACAUACAUAUGGCACGCCACAUGUUACUGUCCGGUUAUUUUAUUAGGCAAACAAGUUUUUAAUAGUACAAAUAGAUGAAAUUUUUAAUGGAAAAGACUAAGUUGCUAUUUGAUCUAAUGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017759173.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   |||||||||||||||*||||| targets:2484   GUACAUUAGAUCAAAGAGCAA   2504 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA	uncharacterized LOC108459768(LOC108459768)	coding protein	psRNATarget
XM_017771863.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   *||||||||||||||||*||| targets:932   AUACAUUAGAUCAAAUAACAA   952 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum proteasome subunit beta type-4-like (LOC108470518), mRNA	proteasome subunit beta type-4-like(LOC108470518)	coding protein	psRNATarget
XM_017784090.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   ||||=||||||||||*||||| targets:1323   GUACGUUAGAUCAAAAAGCAA   1343 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA	uncharacterized LOC108480941(LOC108480941)	coding protein	psRNATarget
XM_017760336.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   ||||=||||||||||*||||| targets:2145   GUACGUUAGAUCAAAAAGCAA   2165 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   ||||=||||||||||*||||| targets:2241   GUACGUUAGAUCAAAAAGCAA   2261 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017766788.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   *||||||||||||||*||||= targets:1101   AUACAUUAGAUCAAAGAGCAG   1121 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108466432 (LOC108466432), mRNA	uncharacterized LOC108466432(LOC108466432)	coding protein	psRNATarget
XM_017748254.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   **|||||*||||||||*|||| targets:1559   AAACAUUUGAUCAAAUUGCAA   1579 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g50270-like (LOC108450574), mRNA	pentatricopeptide repeat-containing protein At1g50270-like(LOC108450574)	coding protein	psRNATarget
XM_017748256.1	ncRNA:21   CAUGUAAUCUAGUUUAUCGUU   1   **|||||*||||||||*|||| targets:1559   AAACAUUUGAUCAAAUUGCAA   1579 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g50270-like (LOC108450575), mRNA	pentatricopeptide repeat-containing protein At1g50270-like(LOC108450575)	coding protein	psRNATarget