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BaseInfo

ncRNA ID novel_gar_miR1440
Species Gossypium arboreum
Class miRNA
Genome position Chr11:61382889-61382968 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719;SRR3180721
Length 21
Mature sequence(if miRNA) 60 - UUUACCAAAAUAUCUAAGGAU - 80
Stem-loop(if miRNA) --                                     A
  UUUACCAAAAUAUCUAAGGAUUUACCAAAAUUUCUAA G
  |||||||||||||||||||||||||||||||||||||
  AAAUGGUUUUAUAGAUUCCUAAAUGGUUUUAAAGAUU U
GA                                     G
Stem-loop sequence UUUACCAAAAUAUCUAAGGAUUUACCAAAAUUUCUAAAGUGUUAGAAAUUUUGGUAAAUCCUUAGAUAUUUUGGUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017791195.1
ncRNA:21   UAGGAAUCUAUAAAACCAUUU   1
  *|=|||=|||||||||||||=
targets:2   UUUCUUGGAUAUUUUGGUAAG   22

3.0 PREDICTED: Gossypium arboreum serine/threonine-protein kinase tricorner-like (LOC108487002), transcript variant X2, mRNA serine/threonine-protein kinase tricorner-like(LOC108487002) coding protein psRNATarget