Search result

BaseInfo

ncRNA ID	novel_gar_miR1437
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:96225807-96225871 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR1029587
Length	24
Mature sequence(if miRNA)	42 - ACUGGACCUAAGAAGAAUAGAUCC - 65
Stem-loop(if miRNA)	--AC     C   G  --          -    A     UGGAC UAA AA  GAAUAGAUCC UGAA C     ||||| ||| ||  |||||||||| ||||     ACUUG AUU UU  CUUAUUUAGG AUUU U UGAU     U   G  CA          U    A
Stem-loop sequence	ACUGGACCUAAGAAGAAUAGAUCCUGAAACUAUUUAUGGAUUUAUUCACUUGUUAUGUUCAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017771491.1	ncRNA:24   CCUAGAUAAGAAGAAUCCAGGUCA   1   *|*||*||||*||||||||||||* targets:3452   UGCUCCAUUCCUCUUAGGUCCAGA   3475 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108470217 (LOC108470217), transcript variant X2, mRNA	uncharacterized LOC108470217(LOC108470217)	coding protein	psRNATarget
XM_017771490.1	ncRNA:24   CCUAGAUAAGAAGAAUCCAGGUCA   1   *|*||*||||*||||||||||||* targets:3452   UGCUCCAUUCCUCUUAGGUCCAGA   3475 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108470217 (LOC108470217), transcript variant X1, mRNA	uncharacterized LOC108470217(LOC108470217)	coding protein	psRNATarget
XM_017755042.1	ncRNA:24   CCUAGAUAAGAAGAAUCCAGGUCA   1   ***||*||||*||||||||||||* targets:3549   UACUCCAUUCCUCUUAGGUCCAGG   3572 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108456466 (LOC108456466), transcript variant X2, mRNA	uncharacterized LOC108456466(LOC108456466)	coding protein	psRNATarget
XM_017755037.1	ncRNA:24   CCUAGAUAAGAAGAAUCCAGGUCA   1   ***||*||||*||||||||||||* targets:3549   UACUCCAUUCCUCUUAGGUCCAGG   3572 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108456466 (LOC108456466), transcript variant X1, mRNA	uncharacterized LOC108456466(LOC108456466)	coding protein	psRNATarget