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BaseInfo

ncRNA ID novel_gar_miR1423
Species Gossypium arboreum
Class miRNA
Genome position Chr3:42292688-42292759 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 21
Mature sequence(if miRNA) 52 - UGACAUGGCAAAAAUGCUCCC - 72
Stem-loop(if miRNA) --              CA        ----       C
  GAGUGUUUUUGCCA  UCAGCAAA    GCGUCUU A
  ||||||||||||||  ||||||||    |||||||
  CUCGUAAAAACGGU  AGUUGUUU    CGCGGGA U
CC              AC        UUAG       G
Stem-loop sequence GAGUGUUUUUGCCACAUCAGCAAAGCGUCUUCAUGAGGGCGCGAUUUUUGUUGACAUGGCAAAAAUGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017776740.1
ncRNA:21   CCCUCGUAAAAACGGUACAGU   1
  ***||||||||||||||||=|
targets:1303   UUUAGCAUUUUUGCCAUGUUA   1323

2.5 PREDICTED: Gossypium arboreum bifunctional phosphatase IMPL2, chloroplastic (LOC108474730), mRNA bifunctional phosphatase IMPL2, chloroplastic(LOC108474730) coding protein psRNATarget