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BaseInfo

ncRNA ID novel_gar_miR1421
Species Gossypium arboreum
Class miRNA
Genome position Chr3:24912186-24912390 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 24
Mature sequence(if miRNA) 182 - UCACGUGACAUAUUGAAAGGCUGC - 205
Stem-loop(if miRNA) AACU     --     C               A          AAU       CUA        A    -    CAAAA          A     ----       U
    UCUUU  GUAUG CAUGUGACAAGUAUA AUUUUAAAAA   AAAAAAU   UAAAAAUA AUAA UUAA     AAGAAUAUAA UUUUU    GUGGAGG U
    |||||  ||||| ||||||||||||||| ||||||||||   |||||||   |||||||| |||| ||||     |||||||||| |||||    ||||||| C
    GGAAA  UAUAC GUGCACUGUUUAUAU UAAAAUUUUU   UUUUUUA   AUUUUUAU UAUU AAUU     UUUUUAUAUU AAAAA    UACUUCU A
CGUC     GU     A               A          AAU       --A        A    U    ---AA          A     AGUG       U
Stem-loop sequence AACUUCUUUGUAUGCCAUGUGACAAGUAUAAAUUUUAAAAAAAUAAAAAAUCUAUAAAAAUAAAUAAUUAACAAAAAAGAAUAUAAAUUUUUGUGGAGGUUCAUUCUUCAUGUGAAAAAAAUUAUAUUUUUAAUUAAUUUAUAUAUUUUUAAAUUUUUUUAAUUUUUAAAAUAUAUAUUUGUCACGUGACAUAUUGAAAGGCUGC