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BaseInfo

ncRNA ID	novel_gar_miR1420
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:22023143-22023247 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	21
Mature sequence(if miRNA)	85 - AGGCUAUGAUGAUGAUGAUGU - 105
Stem-loop(if miRNA)	--    C               CU  UUCUGUUUCUGUUUCUGUUCUUUGUU   AUCG UAUUAUUAUGGCCUU  GC                          U   |||| |||||||||||||||  ||                          C   UAGU GUAGUAGUAUCGGAG  AA                          U UG    A               UA  GCUCUCUCUUCUUCUUCUUCUUCCCU
Stem-loop sequence	AUCGCUAUUAUUAUGGCCUUCUGCUUCUGUUUCUGUUUCUGUUCUUUGUUUCUUCCCUUCUUCUUCUUCUUCUCUCUCGAAAUGAGGCUAUGAUGAUGAUGAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751731.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   **|||||||||||||||||=| targets:2692   CAAUCAUCAUCAUCAUAGCUU   2712 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum EIN3-binding F-box protein 1-like (LOC108453563), mRNA	EIN3-binding F-box protein 1-like(LOC108453563)	coding protein	psRNATarget
XM_017781165.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   *||||||||||||||||||** targets:385   UCAUCAUCAUCAUCAUAGCGG   405 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum HVA22-like protein e (LOC108478691), mRNA	HVA22-like protein e(LOC108478691)	coding protein	psRNATarget
XM_017794593.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   =|||||||||||||||*|||* targets:1574   GCAUCAUCAUCAUCAUCGCCA   1594 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489878 (LOC108489878), transcript variant X1, mRNA	uncharacterized LOC108489878(LOC108489878)	coding protein	psRNATarget
XM_017794594.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   =|||||||||||||||*|||* targets:1159   GCAUCAUCAUCAUCAUCGCCA   1179 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489878 (LOC108489878), transcript variant X2, mRNA	uncharacterized LOC108489878(LOC108489878)	coding protein	psRNATarget
XM_017772603.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   *|||||||||||||||*|||* targets:99   UCAUCAUCAUCAUCAUUGCCC   119 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 32-like (LOC108471036), mRNA	zinc finger CCCH domain-containing protein 32-like(LOC108471036)	coding protein	psRNATarget
XM_017773507.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   *|||||||||||||||*|||* targets:112   UCAUCAUCAUCAUCAUCGCCC   132 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum proline-rich receptor-like protein kinase PERK4 (LOC108471972), mRNA	proline-rich receptor-like protein kinase PERK4(LOC108471972)	coding protein	psRNATarget
XM_017747535.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   *|||||||||||||||*|||* targets:400   UCAUCAUCAUCAUCAUCGCCA   420 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable E3 ubiquitin-protein ligase XERICO (LOC108450085), mRNA	probable E3 ubiquitin-protein ligase XERICO(LOC108450085)	coding protein	psRNATarget
XM_017761966.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   =*||=|||||||||||*|||| targets:1103   GGAUUAUCAUCAUCAUCGCCU   1123 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108461968 (LOC108461968), mRNA	uncharacterized LOC108461968(LOC108461968)	coding protein	psRNATarget
XM_017775461.1	ncRNA:21   UGUAGUAGUAGUAGUAUCGGA   1   *|*||*||||||||||||||* targets:893   UCCUCCUCAUCAUCAUAGCCA   913 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum trihelix transcription factor GTL2 (LOC108473733), mRNA	trihelix transcription factor GTL2(LOC108473733)	coding protein	psRNATarget