Search result

BaseInfo

ncRNA ID	novel_gar_miR1415
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr2:70592629-70592748 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	21
Mature sequence(if miRNA)	100 - UUAAAGUAGAAAUAUAAGAAA - 120
Stem-loop(if miRNA)	--                C             UU    ----------UCUUC    AUUGGGUU   UCUUAUAUUUCUACUU AACAAUAUUCAUA  UUCU               GCCC        U   |||||||||||||||| |||||||||||||  ||||               ||||   AGAAUAUAAAGAUGAA UUGUUAUAAGUAU  AAGA               ACAU        C AA                A             UC    CUAACCGUCGUUAUC    UAAUAUGU
Stem-loop sequence	UCUUAUAUUUCUACUUCAACAAUAUUCAUAUUUUCUUCUUCGCCCAUUGGGUUUCUGUAUAAUUACACUAUUGCUGCCAAUCAGAACUUAUGAAUAUUGUUAAAGUAGAAAUAUAAGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017785010.1	ncRNA:21   AAAGAAUAUAAAGAUGAAAUU   1   |*||||||||||||||||||| targets:5319   UGUCUUAUAUUUCUACUUUAA   5339 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108481927 (LOC108481927), transcript variant X2, mRNA	uncharacterized LOC108481927(LOC108481927)	coding protein	psRNATarget
XM_017792062.1	ncRNA:21   AA---AGAAUAUAAAGAUGAAAUU   1   ||---||||||||||||||||||| targets:1821   UUCCGUCUUAUAUUUCUACUUUAA   1844 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2-like (LOC108487684), transcript variant X3, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2-like(LOC108487684)	coding protein	psRNATarget
XM_017792063.1	ncRNA:21   AA---AGAAUAUAAAGAUGAAAUU   1   ||---||||||||||||||||||| targets:1244   UUCCGUCUUAUAUUUCUACUUUAA   1267 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2-like (LOC108487684), transcript variant X4, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2-like(LOC108487684)	coding protein	psRNATarget
XM_017792064.1	ncRNA:21   AA---AGAAUAUAAAGAUGAAAUU   1   ||---||||||||||||||||||| targets:1051   UUCCGUCUUAUAUUUCUACUUUAA   1074 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum valine--tRNA ligase, chloroplastic/mitochondrial 2-like (LOC108487684), transcript variant X5, mRNA	valine--tRNA ligase, chloroplastic/mitochondrial 2-like(LOC108487684)	coding protein	psRNATarget