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BaseInfo

ncRNA ID novel_gar_miR1409
Species Gossypium arboreum
Class miRNA
Genome position Chr2:22022991-22023045 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719;SRR3180721
Length 19
Mature sequence(if miRNA) 1 - AAGUCAUUUUCCGAAAAAG - 19
Stem-loop(if miRNA) --     UCAU            C   U
  UUUUC    AAAAUGACUUAU CUU U
  |||||    |||||||||||| ||| A
  AAAAG    UUUUACUGAAUA GAA A
GA     --CC            U   A
Stem-loop sequence UUUUCUCAUAAAAUGACUUAUCCUUUUAAAAAGUAUAAGUCAUUUUCCGAAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017788782.1
ncRNA:19   GAAAAAGCCUUUUACUGAA   1
  |||||*|||||||||*|||
targets:234   CUUUUACGGAAAAUGUCUU   252

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108484897 (LOC108484897), mRNA uncharacterized LOC108484897(LOC108484897) coding protein psRNATarget