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BaseInfo

ncRNA ID novel_gar_miR1404
Species Gossypium arboreum
Class miRNA
Genome position Chr1:54898806-54898860 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 19
Mature sequence(if miRNA) 37 - AAGUCAUUUUCCGAAAAAG - 55
Stem-loop(if miRNA) --     CU U            C   U
  UUUUC  G AAAAUGACUUAC CUU U
  |||||  | |||||||||||| ||| G
  AAAAG  C UUUUACUGAAUG GAA A
GA     -C -            C   A
Stem-loop sequence UUUUCCUGUAAAAUGACUUACCCUUUUGAAAAGCGUAAGUCAUUUUCCGAAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017788782.1
ncRNA:19   GAAAAAGCCUUUUACUGAA   1
  |||||*|||||||||*|||
targets:234   CUUUUACGGAAAAUGUCUU   252

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108484897 (LOC108484897), mRNA uncharacterized LOC108484897(LOC108484897) coding protein psRNATarget