Search result

BaseInfo

ncRNA ID	ath-miRf11081-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UUGGUGUCGAUCGACACCUC - NA
Stem-loop(if miRNA)	U                C  U UU    C U        AA   U UC  CA  UGGUGUCGAUCGACAC UC G  GUGU G UCGACACC  UCG G  UU  U  |||||||||||||||| || |  |||| | ||||||||  ||| |  ||  ACCACAGCUGGCUGUG AG C  CACA C AGCUGUGG  AGC C  AA  U A                U  U UC    U U        -A   - CU  UC
Stem-loop sequence	UUGGUGUCGAUCGACACCUCUGUUGUGUCGUUCGACACCAAUCGUGUCUUCAUUCUAAUCCCGAAGGUGUCGAUCUACACCUCUGAUGUGUCGGUCGACACCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069810.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   *=|||||||||||||||||= targets:334   UGGGUGUCGAUCGACACCAG   353 Target Full Sequence	2.0	Arabidopsis thaliana At2g13270 mRNA, partial sequence	NA	coding protein	psRNATarget
DQ069810.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||||||||||||||||* targets:209   UUGGUGUCGAUCGACACCAU   228 Target Full Sequence	2.0	Arabidopsis thaliana At2g13270 mRNA, partial sequence	NA	coding protein	psRNATarget
JA894865.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||||||||||||||||= targets:82   UUGGUGUCGAUCGACACCAG   101 Target Full Sequence	2.0	Sequence 182 from Patent WO2011067745	NA	coding protein	psRNATarget
AY219108.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||||||||||||||||= targets:399   CUGGUGUCGAUCGACACCAG   418 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g06095/F5K7.25) mRNA, complete cds	NA	coding protein	psRNATarget
NM_147252.2	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||||||||||||||||= targets:437   CUGGUGUCGAUCGACACCAG   456 Target Full Sequence	2.0	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT2G06095)	coding protein	psRNATarget
EF183308.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||*|||||||||||||* targets:1261   AUGGUAUCGAUCGACACCAC   1280 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_5244 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183309.1	ncRNA:20   CUCCACAGCUAGCUGUGGUU   1   **|||*|||||||||||||* targets:1353   AUGGUAUCGAUCGACACCAC   1372 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_5245 unknown mRNA sequence	NA	coding protein	psRNATarget