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BaseInfo

ncRNA ID novel_gar_miR1401
Species Gossypium arboreum
Class miRNA
Genome position Chr10:63700296-63700355 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 21
Mature sequence(if miRNA) 1 - UUUACCAAAAUAUCUAAGGAU - 21
Stem-loop(if miRNA) --   A                    - UU
  UUU CCAAAAUAUCUAAGGAUUUA C  U
  ||| |||||||||||||||||||| |  C
  AAA GGUUUUAUAGAUUCCUAAAU G  U
GA   C                    A UU
Stem-loop sequence UUUACCAAAAUAUCUAAGGAUUUACUUUCUUUGAUAAAUCCUUAGAUAUUUUGGCAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017791195.1
ncRNA:21   UAGGAAUCUAUAAAACCAUUU   1
  *|=|||=|||||||||||||=
targets:2   UUUCUUGGAUAUUUUGGUAAG   22

3.0 PREDICTED: Gossypium arboreum serine/threonine-protein kinase tricorner-like (LOC108487002), transcript variant X2, mRNA serine/threonine-protein kinase tricorner-like(LOC108487002) coding protein psRNATarget