ncRNA ID | novel_gar_miR1397 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr13:56961657-56961718 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180719 |
Length | 19 |
Mature sequence(if miRNA) | 1 - AUAAAUAUUAUUGUCAAUG - 19 |
Stem-loop(if miRNA) |
--A   A            -G          C    UGA UAAUGAUAUUUA  UCGAUUGAGU U    ||| ||||||||||||  ||||||||||    ACU GUUAUUAUAAAU  AGUUAGCUCA U GUA   -            AG          A |
Stem-loop sequence | AUGAAUAAUGAUAUUUAGUCGAUUGAGUCUUAACUCGAUUGAGAUAAAUAUUAUUGUCAAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017753279.1 |
|
2.5 | PREDICTED: Gossypium arboreum cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like (LOC108454719), transcript variant X2, mRNA | cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like(LOC108454719) | coding protein | psRNATarget |