Search result

BaseInfo

ncRNA ID novel_gar_miR1397
Species Gossypium arboreum
Class miRNA
Genome position Chr13:56961657-56961718 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 19
Mature sequence(if miRNA) 1 - AUAAAUAUUAUUGUCAAUG - 19
Stem-loop(if miRNA) --A   A            -G          C
   UGA UAAUGAUAUUUA  UCGAUUGAGU U
   ||| ||||||||||||  ||||||||||
   ACU GUUAUUAUAAAU  AGUUAGCUCA U
GUA   -            AG          A
Stem-loop sequence AUGAAUAAUGAUAUUUAGUCGAUUGAGUCUUAACUCGAUUGAGAUAAAUAUUAUUGUCAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753279.1
ncRNA:19   GUAACUGUUAUUAUAAAUA   1
  |*|||||||||||||||*|
targets:1369   CUUUGACAAUAAUAUUUCU   1387

2.5 PREDICTED: Gossypium arboreum cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like (LOC108454719), transcript variant X2, mRNA cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like(LOC108454719) coding protein psRNATarget