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BaseInfo

ncRNA ID	novel_gar_miR1394
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:52519709-52519787 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	19
Mature sequence(if miRNA)	61 - UGCCAAUGGAGAUUUGCCC - 79
Stem-loop(if miRNA)	--     A     UC      CC   -     CCAC    C   GCAAA UCUCC  UGGCAG  AGC CAUUG    UUCA C   ||||| |||||  ||||||  ||| |||||    ||||   CGUUU AGAGG  ACCGUC  UCG GUGAU    AAGU U CC     -     UA      UC   U     -CUU    A
Stem-loop sequence	GCAAAAUCUCCUCUGGCAGCCAGCCAUUGCCACUUCACCUAUGAAUUCUAGUGUGCUCUCUGCCAAUGGAGAUUUGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794338.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   ||||||||||||*|||||| targets:881   GGGCAAAUCUCCUUUGGCA   899 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017787615.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   ||||||||||||*|||||| targets:902   GGGCAAAUCUCCUUUGGCA   920 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794339.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   ||||||||||||*|||||| targets:959   GGGCAAAUCUCCUUUGGCA   977 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794338.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   |||||*||||||*|||||| targets:936   GGGCACAUCUCCUUUGGCA   954 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017787615.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   *|||||||||||*|||||| targets:862   CGGCAAAUCUCCUUUGGCA   880 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794339.1	ncRNA:19   CCCGUUUAGAGGUAACCGU   1   |||||*||||||*|||||| targets:1014   GGGCACAUCUCCUUUGGCA   1032 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget