ncRNA ID | ath-miRf11080-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - ACUCGACCCCGAGGUCGAGU - NA |
Stem-loop(if miRNA) |
   UC         C -A          CUUCACCUCCAUUACC     AUCACUCGAUCACACCACUCUACCUGGAAGUCGAGUAUCACCAUCACCACCACUCGACUACAUACUCGAUGGCG ACU  ACUCGACCC G  GGUCGAGUGU                UGAUC                                                                          A |||  ||||||||| |  ||||||||||                |||||                                                                          G UGA  UGAGCUGGG C  CCAGCUCACA                CAGCU                                                                          C    CA         U CA          -------------CAC     CACUUAUCGACCUCAGAAGAAAAGAAGGAACACGAACUCACAGACCAACUCACGCCUUACCUCUUCUGAGACUU |
Stem-loop sequence | ACUUCACUCGACCCCGAGGUCGAGUGUCUUCACCUCCAUUACCUGAUCAUCACUCGAUCACACCACUCUACCUGGAAGUCGAGUAUCACCAUCACCACCACUCGACUACAUACUCGAUGGCGAGCUUCAGAGUCUUCUCCAUUCCGCACUCAACCAGACACUCAAGCACAAGGAAGAAAAGAAGACUCCAGCUAUUCACUCGACCACACACUCGACCACCUGGGUCGAGUACAGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EF183005.1 |
|
1.5 | Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EF183005.1 |
|
1.5 | Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EF183311.1 |
|
2.5 | Arabidopsis thaliana clone asmbl_5275 unknown mRNA sequence | NA | coding protein | psRNATarget |