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BaseInfo

ncRNA ID ath-miRf11080-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - ACUCGACCCCGAGGUCGAGU - NA
Stem-loop(if miRNA)    UC         C -A          CUUCACCUCCAUUACC     AUCACUCGAUCACACCACUCUACCUGGAAGUCGAGUAUCACCAUCACCACCACUCGACUACAUACUCGAUGGCG
ACU  ACUCGACCC G  GGUCGAGUGU                UGAUC                                                                          A
|||  ||||||||| |  ||||||||||                |||||                                                                          G
UGA  UGAGCUGGG C  CCAGCUCACA                CAGCU                                                                          C
   CA         U CA          -------------CAC     CACUUAUCGACCUCAGAAGAAAAGAAGGAACACGAACUCACAGACCAACUCACGCCUUACCUCUUCUGAGACUU
Stem-loop sequence ACUUCACUCGACCCCGAGGUCGAGUGUCUUCACCUCCAUUACCUGAUCAUCACUCGAUCACACCACUCUACCUGGAAGUCGAGUAUCACCAUCACCACCACUCGACUACAUACUCGAUGGCGAGCUUCAGAGUCUUCUCCAUUCCGCACUCAACCAGACACUCAAGCACAAGGAAGAAAAGAAGACUCCAGCUAUUCACUCGACCACACACUCGACCACCUGGGUCGAGUACAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:20   UGAGCUGGAGCCCCAGCUCA   1
  |||||||||||*||||||||
targets:1866   ACUCGACCUCGAGGUCGAGU   1885

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:20   UGAGCUGGAGCCCCAGCUCA   1
  ||||||||*|||||||||||
targets:1925   ACUCGACCACGGGGUCGAGU   1944

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
EF183311.1
ncRNA:20   UGAGCUGGAGCCCCAGCUCA   1
  ||||||*||||*||||||||
targets:580   ACUCGAGCUCGUGGUCGAGU   599

2.5 Arabidopsis thaliana clone asmbl_5275 unknown mRNA sequence NA coding protein psRNATarget