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BaseInfo

ncRNA ID	novel_gar_miR1390
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:2694597-2694649 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	19
Mature sequence(if miRNA)	35 - GUUGUUGUAGUAUAGUGGU - 53
Stem-loop(if miRNA)	--         UUUG       ---UA     CAUUAUACU    UAGCAAU     GGA   |||||||||    |||||||     ||C   GUGAUAUGA    GUUGUUG     CCA UG         ---U       UCGAG
Stem-loop sequence	CAUUAUACUUUUGUAGCAAUUAGGACACCGAGCUGUUGUUGUAGUAUAGUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017791848.1	ncRNA:19   UGGUGAUAUGAUGUUGUUG   1   ||||||||||||||||=|| targets:1383   ACCACUAUACUACAACGAC   1401 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108487493 (LOC108487493), transcript variant X1, mRNA	uncharacterized LOC108487493(LOC108487493)	coding protein	psRNATarget
XM_017791849.1	ncRNA:19   UGGUGAUAUGAUGUUGUUG   1   ||||||||||||||||=|| targets:1381   ACCACUAUACUACAACGAC   1399 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108487493 (LOC108487493), transcript variant X2, mRNA	uncharacterized LOC108487493(LOC108487493)	coding protein	psRNATarget
XM_017772745.1	ncRNA:19   UGGUGAU-AUGAUGUUGUUG   1   |||||||-|||||||||||| targets:689   ACCACUACUACUACAACAAC   708 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum transcription factor IBH1-like (LOC108471154), mRNA	transcription factor IBH1-like(LOC108471154)	coding protein	psRNATarget
XM_017756190.1	ncRNA:19   UGGUGAUAUGAUGUUGUUG   1   |*=|*|||||||||||||| targets:2396   AAUAAUAUACUACAACAAC   2414 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum myosin-8-like (LOC108457236), transcript variant X2, mRNA	myosin-8-like(LOC108457236)	coding protein	psRNATarget
XM_017756189.1	ncRNA:19   UGGUGAUAUGAUGUUGUUG   1   |*=|*|||||||||||||| targets:1945   AAUAAUAUACUACAACAAC   1963 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum myosin-8-like (LOC108457236), transcript variant X1, mRNA	myosin-8-like(LOC108457236)	coding protein	psRNATarget