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BaseInfo

ncRNA ID novel_gar_miR1386
Species Gossypium arboreum
Class miRNA
Genome position Chr12:120502296-120502378 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 24
Mature sequence(if miRNA) 60 - AGGAUGAAAAUACUGAUAUGGCAU - 83
Stem-loop(if miRNA) --A   C       A            ---UUUUA      UU
   CCA AUCAGUA UUUCAUCCUGAA        GGAUUU  A
   ||| ||||||| ||||||||||||        ||||||
   GGU UAGUCAU AAAGUAGGACUU        UUUAGA  G
UAC   A       A            UUUUUUAG      UU
Stem-loop sequence ACCACAUCAGUAAUUUCAUCCUGAAUUUUAGGAUUUUUAGUUAGAUUUGAUUUUUUUUCAGGAUGAAAAUACUGAUAUGGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017747330.1
ncRNA:24   UACGGUAUAGUCAUAAAAGUAGGA   1
  |||||||*||||||||||||||=|
targets:1409   AUGCCAUUUCAGUAUUUUCAUCUU   1432

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108449938 (LOC108449938), transcript variant X1, mRNA uncharacterized LOC108449938(LOC108449938) coding protein psRNATarget