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BaseInfo

ncRNA ID	novel_gar_miR1380
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:127411396-127411559 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	24
Mature sequence(if miRNA)	1 - AGGGAUAGAGAUGACGUGGAAUCA - 24
Stem-loop(if miRNA)	--             -        UUCCAAU        G G  A   A       C    GAUUU     A     AA  A  UUUA   AUUUCAUGUCAUC CUAUUCCU       AGGAGAAU A AA UUA AUUUUUC UCUU     UUAGC UUUUU  UU GA    A   ||||||||||||| ||||||||       |||||||| | || ||| ||||||| ||||     ||||| |||||  || ||    A   UAAGGUGCAGUAG GAUAGGGA       UUCUCUUA U UU AGU UAAAAAG AGAA     AAUCG AAAAG  AG CU    U AC             A        -------        G G  G   C       A    -----     A     GA  A  UGUU
Stem-loop sequence	AUUUCAUGUCAUCCUAUUCCUUUCCAAUAGGAGAAUGAGAAAUUAAAUUUUUCCUCUUGAUUUUUAGCAUUUUUAAUUAGAUUUAAAUUUGUUCAGAAGGAAAAAGCUAAAAGAAGAAAAAUCUGAGUUGUGAUUCUCUUAGGGAUAGAGAUGACGUGGAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   ACUAAGGUGCAGUAGAGAUAGGGA   1   |||**|||||||||||*||||||| targets:1361   UGACGCCACGUCAUCUGUAUCCCU   1384 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   ACUAAGGUGCAGUAGAGAUAGGGA   1   |||**|||||||||||*||||||| targets:1630   UGACGCCACGUCAUCUGUAUCCCU   1653 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017759563.1	ncRNA:24   ACUAAGGUGCAGUAGAGAUAGGGA   1   |||**|||||||||||*||||||| targets:2362   UGACGCCACGUCAUCUGUAUCCCU   2385 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017756176.1	ncRNA:24   ACUAAGGUGCAGUAGAGAUAGGGA   1   |||**=||||||||||*||||||| targets:667   UGACGUCACGUCAUCUGUAUCCCU   690 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108457229 (LOC108457229), mRNA	uncharacterized LOC108457229(LOC108457229)	coding protein	psRNATarget