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BaseInfo

ncRNA ID	novel_gar_miR1377
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:12841316-12841422 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	24
Mature sequence(if miRNA)	1 - AGAGGAAAAAUCUGAUUUGUCAUU - 24
Stem-loop(if miRNA)	--                     C           AUUA    UUGGAUUUGAAU   UGACAAAUCAGAUUUUUCCUC UGAUUUUUAGC    UUAG            U   ||||||||||||||||||||| |||||||||||    ||||   ACUGUUUAGUCUAAAAAGGAG ACUAAAGGUCG    AAAA            U UU                     A           ---A    GGAGGACUUUUG
Stem-loop sequence	UGACAAAUCAGAUUUUUCCUCCUGAUUUUUAGCAUUAUUAGUUGGAUUUGAAUUUGUUUUCAGGAGGAAAAAGCUGGAAAUCAAGAGGAAAAAUCUGAUUUGUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017763570.1	ncRNA:24   UUACUGUUUAGUCUAAAAAGGAGA   1   |||-|||||||||||||||||||* targets:1816   AAU-ACAAAUCAGAUUUUUCCUCA   1838 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X1, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763572.1	ncRNA:24   UUACUGUUUAGUCUAAAAAGGAGA   1   |||-|||||||||||||||||||* targets:1827   AAU-ACAAAUCAGAUUUUUCCUCA   1849 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X3, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763571.1	ncRNA:24   UUACUGUUUAGUCUAAAAAGGAGA   1   |||-|||||||||||||||||||* targets:1828   AAU-ACAAAUCAGAUUUUUCCUCA   1850 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X2, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget