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BaseInfo

ncRNA ID novel_gar_miR1372
Species Gossypium arboreum
Class miRNA
Genome position Chr11:96045694-96045764 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180719
Length 21
Mature sequence(if miRNA) 51 - UCGGAGCGGCCGGUCUUGUCA - 71
Stem-loop(if miRNA) --      C  CC       U      --U UG   
  UCGGAG GG  GGUCUUG CAUCUC   U  CCCA
  |||||| ||  ||||||| ||||||   |  |||U
  AGCUUC CC  CUAGGAU GUAGAG   G  GGGU
GU      U  AA       U      UGG GU   
Stem-loop sequence UCGGAGCGGCCGGUCUUGUCAUCUCUUUGCCCAUUGGGUGGGGUGAGAUGUUAGGAUCAACCUCUUCGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753790.1
ncRNA:21   ACUGUUCUGGCCGGCGAGGCU   1
  |||||||||||||||||||||
targets:1926   UGACAAGACCGGCCGCUCCGA   1946

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455200 (LOC108455200), mRNA uncharacterized LOC108455200(LOC108455200) coding protein psRNATarget
XM_017753787.1
ncRNA:21   ACUGUUCUGGCCGGCGAGGCU   1
  |||||||||||||||||||||
targets:2169   UGACAAGACCGGCCGCUCCGA   2189

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455194 (LOC108455194), mRNA uncharacterized LOC108455194(LOC108455194) coding protein psRNATarget