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BaseInfo

ncRNA ID	novel_gar_miR1369
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:41092462-41092590 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180719
Length	24
Mature sequence(if miRNA)	1 - AACCCAUAAAUAGAAGAAUAAUGC - 24
Stem-loop(if miRNA)	--     C        -       AGG   GG  U  G AUA   C     ----        AAAAAA   AUUGU CUUCUAUU AUGGGUU   GAG  GC AU U   AUU UAGGU    AUUGUGUC      A   ||||| |||||||| |||||||   |||  || || |   ||| |||||    ||||||||      A   UAAUA GAAGAUAA UACCCAA   CUC  UG UA A   UAA AUCCA    UAAUAUAG      G CG     A        A       ---   UU  U  G --G   U     AACC        ACGGAA
Stem-loop sequence	AUUGUCCUUCUAUUAUGGGUUAGGGAGGGGCUAUGUAUAAUUCUAGGUAUUGUGUCAAAAAAAAGAAGGCAGAUAUAAUCCAAACCUAUAAUGAGAUUGUUUCUCAACCCAUAAAUAGAAGAAUAAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017763570.1	ncRNA:24   CGUAAUAAGAAGAUAAAUACCCAA   1   |=||||||=||||||||||||||| targets:1724   GUAUUAUUUUUCUAUUUAUGGGUU   1747 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X1, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763572.1	ncRNA:24   CGUAAUAAGAAGAUAAAUACCCAA   1   |=||||||=||||||||||||||| targets:1735   GUAUUAUUUUUCUAUUUAUGGGUU   1758 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X3, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017763571.1	ncRNA:24   CGUAAUAAGAAGAUAAAUACCCAA   1   |=||||||=||||||||||||||| targets:1736   GUAUUAUUUUUCUAUUUAUGGGUU   1759 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tRNA-splicing endonuclease subunit Sen2-1-like (LOC108463678), transcript variant X2, mRNA	tRNA-splicing endonuclease subunit Sen2-1-like(LOC108463678)	coding protein	psRNATarget
XM_017778352.1	ncRNA:24   CGUAAUAAGAAGAUAAAUACCCAA   1   |||*||||=||||||||||||||| targets:29   GCACUAUUUUUCUAUUUAUGGGUU   52 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum sucrose transport protein SUC2-like (LOC108476210), transcript variant X2, mRNA	sucrose transport protein SUC2-like(LOC108476210)	coding protein	psRNATarget
XM_017788022.1	ncRNA:24   CGUAAUAAGAAGAUAAAUACCCAA   1   |||||||*||*||||||||||||| targets:1343   GCAUUAUCCUCCUAUUUAUGGGUU   1366 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum esterase-like (LOC108484287), mRNA	esterase-like(LOC108484287)	coding protein	psRNATarget