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BaseInfo

ncRNA ID novel_gar_miR1359
Species Gossypium arboreum
Class miRNA
Genome position Chr6:108980448-108980519 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - GUGCUGACGUGGACAAAACGCUCC - 24
Stem-loop(if miRNA) --  UA                        CU   U
  AG  UUUUGUCCAUGUUAGCACAAAGCG  UCC U
  ||  ||||||||||||||||||||||||  |||
  UC  AAAACAGGUGCAGUCGUGUUUCGC  GGG G
CC  GC                        AC   A
Stem-loop sequence AGUAUUUUGUCCAUGUUAGCACAAAGCGCUUCCUUGAGGGCACGCUUUGUGCUGACGUGGACAAAACGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:24   CCUCGCAAAACAGGUGCAGUCGUG   1
  |||||||||||||||=||||||||
targets:6   GGAGCGUUUUGUCCAUGUCAGCAC   29

1.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget
XM_017780527.1
ncRNA:24   CCU-CGCAAAACAGGUGCAGUCGUG   1
  |||-|=|*|||||||||*|||||||
targets:87   GGAAGUGCUUUGUCCACAUCAGCAC   111

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108478102 (LOC108478102), mRNA uncharacterized LOC108478102(LOC108478102) coding protein psRNATarget