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BaseInfo

ncRNA ID novel_gar_miR1353
Species Gossypium arboreum
Class miRNA
Genome position Chr6:70372799-70372865 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - AAAGUCUGUUAACACCUCGUGUUC - 24
Stem-loop(if miRNA) --AAA      U           UU   CU   G
     GUCUGU AACACCUCGUG  CGA  CCG C
     |||||| |||||||||||  |||  |||
     CGGACA UUGUGGGGCAU  GCU  GGC A
AUGUA      -           GG   CU   A
Stem-loop sequence AAAGUCUGUUAACACCUCGUGUUCGACUCCGGCAACGGUCUCGGGUACGGGGUGUUACAGGCAUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017750228.1
ncRNA:24   CUUGUGCUCCACAAUUGUCUGAAA   1
  |||||||||||||||||=|||||*
targets:1264   GAACACGAGGUGUUAACGGACUUA   1287

2.5 PREDICTED: Gossypium arboreum F-box protein At2g27310-like (LOC108452438), mRNA F-box protein At2g27310-like(LOC108452438) coding protein psRNATarget