Search result

BaseInfo

ncRNA ID novel_gar_miR1351
Species Gossypium arboreum
Class miRNA
Genome position Chr5:43204928-43204981 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 31 - AUCGGUCGGUUAACCAAAUUAAUU - 54
Stem-loop(if miRNA) --                     AUUC
  UUAAUUUGGUUAACUGAUCGA    G
  |||||||||||||||||||||
  AAUUAAACCAAUUGGCUGGCU    G
UU                     AAUU
Stem-loop sequence UUAAUUUGGUUAACUGAUCGAAUUCGGUUAAUCGGUCGGUUAACCAAAUUAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017793582.1
ncRNA:24   UUAAUUAAACCAAUUGGCUGGCUA   1
  ||--||*||||||||||||||||*
targets:2911   AA--AAAUUGGUUAACCGACCGAA   2932

2.0 PREDICTED: Gossypium arboreum lysophospholipid acyltransferase 1-like (LOC108489215), transcript variant X2, mRNA lysophospholipid acyltransferase 1-like(LOC108489215) coding protein psRNATarget