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BaseInfo

ncRNA ID	novel_gar_miR1344
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:9909637-9909720 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180719;SRR3180720;SRR3180721
Length	21
Mature sequence(if miRNA)	1 - UUCCACGGCUUUCUUGAACUU - 21
Stem-loop(if miRNA)	--     C           A    UUUU  U       UG   G   UUCCA GGCUUUCUUGA CUUC    UC CUCUUUG  UUA U   ||||| ||||||||||| ||||    || |||||||  |||   AGGGU CUGAAAGAACU GAAG    AG GAGAAAU  AGU A AA     A           G    ---U  -       UA   A
Stem-loop sequence	UUCCACGGCUUUCUUGAACUUCUUUUUCUCUCUUUGUGUUAGUAAUGAAUUAAAGAGGAUGAAGGUCAAGAAAGUCAUGGGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777284.1	ncRNA:21   UUCAAGUUCUUUCGGCACCUU   1   ==*||||||||||||||*||| targets:388   GGAUUCAAGAAAGCCGUAGAA   408 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108475318 (LOC108475318), mRNA	uncharacterized LOC108475318(LOC108475318)	coding protein	psRNATarget
XM_017757211.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   =*|||||||||||||-|||||| targets:661   GCGUUCAAGAAAGCCUGUGGAA   682 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 9 (LOC108457986), mRNA	growth-regulating factor 9(LOC108457986)	coding protein	psRNATarget
XM_017776518.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:750   UCGUUCAAGAAAGCCUGUGGAA   771 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108474554), mRNA	growth-regulating factor 1-like(LOC108474554)	coding protein	psRNATarget
XM_017756380.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:931   CCGUUCAAGAAAGCCUGUGGAA   952 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 7-like (LOC108457363), mRNA	growth-regulating factor 7-like(LOC108457363)	coding protein	psRNATarget
XM_017768601.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:1024   UCGUUCAAGAAAGCCUGUGGAA   1045 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108467815), mRNA	growth-regulating factor 1-like(LOC108467815)	coding protein	psRNATarget
XM_017751970.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:876   UCGUUCAAGAAAGCCUGUGGAA   897 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108453704), mRNA	growth-regulating factor 1-like(LOC108453704)	coding protein	psRNATarget
XM_017751909.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:1155   UCGUUCAAGAAAGCCUGUGGAA   1176 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108453663), mRNA	growth-regulating factor 1-like(LOC108453663)	coding protein	psRNATarget
XM_017780072.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:982   CCGUUCAAGAAAGCCUGUGGAA   1003 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA	uncharacterized LOC108477531(LOC108477531)	coding protein	psRNATarget
XM_017780072.1	ncRNA:21   UUCAAGUUCUUUCGG-CACCUU   1   **|||||||||||||-|||||| targets:1933   CCGUUCAAGAAAGCCUGUGGAA   1954 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA	uncharacterized LOC108477531(LOC108477531)	coding protein	psRNATarget