Search result

BaseInfo

ncRNA ID novel_gar_miR1339
Species Gossypium arboreum
Class miRNA
Genome position Chr4:6435537-6435755 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 196 - AAUUUGACUUAGGGCUCUAGAUGU - 219
Stem-loop(if miRNA) --       A                      UG                      A           U     CCG   C      UAUCAA       - AUGU   U
  AUCUAGA CCUUAAGUCAAAUUCGUGACUU  GCAAACUUUACGAUUUGCUUCC CAUUCAUCCAC CUUAU   UAU AUUUGG      AGCAGAU C    GUU A
  ||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||   ||| ||||||      ||||||| |    ||| U
  UAGAUCU GGGAUUCAGUUUAAGCACUGAA  UGUUUGAAAUGCUAGAUGAAGG GUAAGUAGGUG GAGUA   AUA UAAACC      UCGUCUA G    UAA C
UG       C                      CU                      C           U     AAA   A      UUAAUC       U -GUU   U
Stem-loop sequence AUCUAGAACCUUAAGUCAAAUUCGUGACUUUGGCAAACUUUACGAUUUGCUUCCACAUUCAUCCACUCUUAUCCGUAUCAUUUGGUAUCAAAGCAGAUCAUGUGUUUAUCUAAUUUGGUAUCUGCUCUAAUUCCAAAUAAUAAAAAUGAGUGUGGAUGAAUGCGGAAGUAGAUCGUAAAGUUUGUUCAAGUCACGAAUUUGACUUAGGGCUCUAGAUGU