ncRNA ID | novel_gar_miR1339 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr4:6435537-6435755 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180715 |
Length | 24 |
Mature sequence(if miRNA) | 196 - AAUUUGACUUAGGGCUCUAGAUGU - 219 |
Stem-loop(if miRNA) |
-- A UG A U CCG C UAUCAA - AUGU U AUCUAGA CCUUAAGUCAAAUUCGUGACUU GCAAACUUUACGAUUUGCUUCC CAUUCAUCCAC CUUAU UAU AUUUGG AGCAGAU C GUU A ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||||| | ||| U UAGAUCU GGGAUUCAGUUUAAGCACUGAA UGUUUGAAAUGCUAGAUGAAGG GUAAGUAGGUG GAGUA AUA UAAACC UCGUCUA G UAA C UG C CU C U AAA A UUAAUC U -GUU U |
Stem-loop sequence | AUCUAGAACCUUAAGUCAAAUUCGUGACUUUGGCAAACUUUACGAUUUGCUUCCACAUUCAUCCACUCUUAUCCGUAUCAUUUGGUAUCAAAGCAGAUCAUGUGUUUAUCUAAUUUGGUAUCUGCUCUAAUUCCAAAUAAUAAAAAUGAGUGUGGAUGAAUGCGGAAGUAGAUCGUAAAGUUUGUUCAAGUCACGAAUUUGACUUAGGGCUCUAGAUGU |